Fixed
I followed post #12 from
here
Now I have a new problem. So, to test that it worked, I put the bottom cover and the harmonic balancer on. Then I tried starting the engine and it worked, but it sounded like the timing was off a bit. So, I tore it down again and made sure everything was aligned and tightened. Tried starting it again and nothing. I figured I had drained the battery a bit. I put my charger on with it set on the 50 amp start setting and tried cranking, but it still did not fire once.
When setting the timing from scratch, all I have to do is align the crankshaft with 0 degrees and the camshaft with the line correct?