Have a A541E that has kicked the bucket. Now I thought the rebuilt A540E I had on the floor would fit, wrong

The valve body and electrics are different, an almost but not quite thing which is infuriating.
Anyway seems like a slipping clutch from the horrid horrid burnt smell and the way feathering it was making it bite back in. Are the guts of the A540E the same as the A541E? Like the clutch packs and sun gear etc as well as how they fit in the housing. So far looks identical and I can mix and match the parts to get it all the fit I think, part numbers for the clutch packs and stuff look the same so can I make this work?
Also if you can't answer that what about finding burnt clutch disks? I dunno what a burnt out one looks like. Transmission was run low on oil and I can assume overheated a set cause first was fine but upper gears were gone but will the burnt out ones have obvious tell tale signs?