First I have to apologize for my original post.

I thought I had it fixed by replacing the temp sensor for the ECM. Unfortunately the problem has returned.

I have updated the original post to reflect that I am still working on trying to resolve the stumbling and hesitation issue. Any help would be greatly appreciated.
I would just like to restate that the issue of stumbling and hesitation goes away if I disconnect the vacuum line on the EGR valve and drive the car that way but of course if I do this for any length of time I am sure the CEL will come back on. Also I used an aftermarket vacuum modulator instead of a factory OEM, but I don't think that would affect it that much would it?