For those of you who don't have access to a manual I was able to get some info on another site. I'm still in the process and will let you know exactly what wires when done.
Another question:
Since the new 2009 Camry's seem to have the AM-FM antenna built into the rear window does this have something to do with the second smaller round antenna connector. On the back of the stock radio there are (2) antenna plugs, one is the normal size and directly above it is another smaller plug. Does anyone know what this plug is for? I thought perhaps it was power to an antenna amplifier for the back window. There appears to be Fujitsu electronics (small metal boxes wired to the window ) in the rear pillars to the right and left of the rear window. Changing the stock radio to an aftermarket one it appears without this connection the AM-FM reception is rather poor.
Does the back winder antenna require some sort of connection to the radio?
Battery
BLACK
(+)
IGNITION SWITCH HARNESS

Ignition 1
YELLOW
(+)
IGNITION SWITCH HARNESS

Starter 1
BLUE
(+)
IGNITION SWITCH HARNESS

All Door Trigger
BROWN
(-)
AT VEHICLE FUSEBOX

Domelight Super
BROWN
(-)
AT VEHICLE FUSEBOX

LF Latch
BLUE
(-)
AT BECU MODULE IN VEHICLE FUSEBOX

RF Latch
YELLOW
(-)
AT BECU MODULE IN VEHICLE FUSEBOX

LR Latch
LIGHT GREEN
(-)
AT VEHICLE FUSE BOX

RR Latch
GRAY
(-)
AT BECU MODULE IN VEHICLE FUSEBOX

Trunk Trigger
WHITE
(-)
AT BECU MODULE IN VEHICLE FUSEBOX

Hood Trigger
RED
(-)
AT VEHICLE HOOD PIN SWITCH

Alarm Disarm
BLUE
(-)
INGITION SWITCH HARNESS (KEY IN SENSE WIRE)

Parking Lights
BLACK
(-)
AT BECU MODULE IN VEHICLE FUSEBOX

Battery
BLACK
(+)
IGNITION SWITCH HARNESS

Ignition 1
YELLOW
(+)
IGNITION SWITCH HARNESS

Ignition 2
PINK
(+)
IGNITION SWITCH HARNESS

Accessory 1
WHITE
(+)
IGNITION SWITCH HARNESS

Starter 1
BLUE
(+)
IGNITION SWITCH HARNESS

Starter 2
GRAY
(+)
IGNITION SWITCH HARNESS

Anti-Theft Type
UNIVERSAL IMMOBILIZER

Anti-Theft Descript
THE KEY SENDS AN RF SIGNAL TO THE BCM MODULE THROUGH AN ANTENNA LOCATED AROUND THE IGNITION CYLINDER

Key Sense
BLUE
(-)
IGNITION SWITCH HARNESS

Tachometer
BLACK
(AC)
AT DATALINK CONNECTOR UNDER DRIVER DASH

Speed Sense
VIOLET
(AC)
RADIO HARNESS

Parking Lights
BLACK
(-)
AT BECU MODULE IN VEHICLE FUSEBOX

Brake Lights
WHITE
(+)
AT SWITCH ABOVE BRAKE PEDAL

Reverse Lights
RED
(+)
IN HARNESS IN DRIVER KICKPANEL

Horn
WHITE
(-)
AT VEHICLE FUSE BOX