Remove thermostat. Put the neck back. Put water from upper hose side until it come out clear on lower hose side. Put water in lower hose side and run it till it come out clear on upper hose side. To flush the heater, remove upper hose, remove thermostat(hope you haven't put it back yet

), connect lower hose, fill rad with water, put garden hose in uperr hose side on the rad, keep it running. You can keep upper hose on rad and stuck the hose in it. Start the car and turn on heater. Keep it running for a few minute and keep running water into rad to top it up. You'll have nothing but water in it after that. Reconnect everything and make sure you put thermo back and fill it with coolant. Oh clean the over fill bottle too.