A ground loop is caused when one grounds potential is different than the other so it is
possible to get noise when using separate ground points. Grounding everything together is not
mandatory however should eliminate that worry as mentioned
as long as it's a good ground point. In any case
proper grounding practice is of the utmost importance ie making sure the metal is bare, sanding any "coatings" from factory bolts used to ground, proper size cable, solid crimp connections when used and making sure the spot chosen is not "isolated" from the ground plane as can be the case with the way some newer vehicles are manufactured. Also, poorly designed or defective equipment may cause ground loop noise which can be a real pain to diagnose/get rid of!
BTW, I posted a bit of info concerning "separating" power/other wires on the thread below.
Just a little info I'd like to pass along..