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A flashing CEL means you have a serious issue on your hands. Can you give more details? What kind of noise, was it a sharp pop, a boom, metallic, etc.? Did you pull the sparkplugs and read them? A loud engine / rough running / dying in idle - could be related to a sensor (MAF) or a vacuum leak, could also mean that one of the plugs is not firing (misfire). Could be any number of things - first thing I would do it pull the code.
As for running around with a CEL for that long, even if its for a EVAP issue, is not a good idea if you want to keep the car around for a while. CEL will go off eventually, and may come back on for an entirely different reason, especially if you didn't scan and reset the DTC every time the CEL comes on.
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2002 Corolla S, 1.8L 1ZZ-FE VVT-i
2003 Matrix XRS, 1.8L 2ZZ-GE, VVTL-i (RIP)
2009 Matrix XRS, 2.4L 2AZ-FE VVT-i
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