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Timing probably hasn't jumped on you - if it did - your won't any reliable spark on the other cylinders. Sounds like you already verified spark on not on plugs cylinders (sounds like no spark on #1 and #2). Swapping coil packs makes no difference - same with swapping injectors, which also makes no difference. At this point, only thing that is left and the results of your quick test point at an ECM problem or wiring issue (electrical noise) to the ignition system or fuel delivery problem (this is unlikely, since you saw fuel on the #1and #2 plugs).
Have to hook a scope or multimeter (high impedance) to the signal lines running to the coil packs and see if there is any signal there for firing plugs #1 and #2. Could be as simple as a short in the wiring, or some electrical break/disconnect somwhere in the main wiring harness or various relays.
You've pretty much got it narrowed down - I would try starting from the coil packs and work back toward the ECM.
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2002 Corolla S, 1.8L 1ZZ-FE VVT-i
2003 Matrix XRS, 1.8L 2ZZ-GE, VVTL-i (RIP)
2009 Matrix XRS, 2.4L 2AZ-FE VVT-i
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