I started tearing into the transmission tonight.
First I finally managed to remove the vehicle speed sensor.

Yes that is a slide hammer
Then the transmission.
First remove the clutch release fork pivot. (19mm socket)
Then backup light switch (27mm) and vehicle speed sensor (above)
Then remove shifter shaft lock bolt, 4 bolts and shaft. This lock bolt is 24mm in 2001, but a lot smaller in 1998. Go figure.
Look at all the crap inside the cover!
Pull one of the axle seal while I'm at it. Yes, that's the same slide hammer.

More crap exposed
5th gear. 40T driving 29T, so 0.725
Output shaft has a notch for staking the lock nut. Stick a screwdriver/chisel here to loosen it.
After that, undo lock nut with 27mm socket. Torque is 87 ft-lbs so you need lots of leverage AND engage two of the gears to make sure the two shafts lock together. Engage them by sticking a 1/4" socket extension into where the shifter shaft is.
Shift fork #3 is seen removed here. Set bolt is 10mm socket and loctited.
Tap out the snap ring on 5th gear synchro. Lacking the proper "SST" 5th gear driven gear and 5th gear synchro can be pulled like this:
5 synchro sleeve

5 driven gear
Too late in the night, to be continued...