I just purchased a used 2005 Corolla XRS a few weeks ago and it has an Ingen intake on it, the next day after I bought it the CEL went on.
After resetting the battery and it popping up again I got the code read by an employee of O Riellys (they dont do free readings as a company anymore) and the code was 440=Secondary Air Injection Switch stuck open.
SO as of now I disconnected the hose going from the intake to the air pump and capped it off, and put an air filter on the end of the hose that goes to the air pump. So far the CEL hasnt come back on. Hopefully that helps. If anyone has feedback it would be appreciated!