There are several options, first, you can go with an upgraded CT-26, the 57 trim is most popular, it should give you more power and the same spool but with a slightly shorted lifespan.
Other bolt-on options are the Greddy TDO6 kit, which adapts to work with your stock DP, manifold, etc. for about $1,800 new, so it's pretty pricey, but is good for the 500hp range.
The SupraSport BOSS series turbos are a bit cheaper (start at around $1,500 for a full kit), and are good for anything from 425-650hp depending on what trim and options you get.
www.suprasport.com
The JT series turbos are the least well known, and are comparable to the BOSS series turbos. They're in about the $1,400-1,700 range and can offer anywhere from 400-650hp
http://notrice.com
The Sound Performance turbos are the most common (except for the upgraded CT-26es) bolt-on aftermarket turbo for the MKIII, they offer similar if not more power than the JT and BOSS turbos, and are a bit cheaper. Early revisions had some reliability problems, but from what I've heard, they've already been sorted.
http://www.spracingonline.com
The best place to find this info is to search through
www.supramania.com or
www.supraforums.com
Good luck!