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The 5-speed W58 from the 86 will work, but you'll need the bellhousing from a JZA80 Supra, JZZ31 SC300 or JCE10 IS300 to bolt it to the engine, also a flywheel from a 5-speed 2JZ as well.
Using the W58 from the newer Supra would be good as well, but the shifter setup is entirely different, so you'd need to swap the tail housing and possibly some of the internals (ABS tone ring, if your car has ABS, this is also connected with the speedometer drive gear on the output shaft).
Really the easiest way would be to use a Supra transmission with the bellhousing from a 5-speed 2JZ.
If you want to use the R154 like bgrieger suggested, you can also do that, the bellhousing can be had relatively easily in the USA from places like Driftmotion or Elmhurst/Champion Toyota. You'll need a 1JZ bellhousing and flywheel, and everything else from a 7M-GTE.
Jeff
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2011 Lexus IS250 Obsidian "F-Sport 6MT" with LSD
1986 AE86 Corolla GT-S Supercharged
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