MRQ Turbo is correct, at neutral there is no load, so although u will get a little pressure, if u have a guage, it will go up to I think - 5 vacuum. So it does buils a little, but not enough to really hear the turbo as u are still in vacuum and not in boost.
When u are revving in neutral u are only spinning on the engine, u are no longer going through the drivetrain , also u are not trying to move 2600 lbs. of car along either. Thus u will rev faster, it is completely normal, but I would chech all your ignition components as Mr2's love to eat plugs, and wires. U can get a full replacement of cap, rotor, plugs from
http://www.twosrus.com/catalog/produ...roducts_id=221
and then just purchase the wires seperately.
Hopefully this will resolve the issue with your running conditions under boost, but as you said, it might be other things to contribute as well... Good luck