Yeah, It just seemed weird that the bigger amp wasn't turning off. I still need a bigger battery or alternator, but I think the main problem is that I have a loose wire somewhere and when my sub hits real hard with a quick low note instead of something constant it causes the wire to become disconnected for a short period of time. I think it is my remote wire going from my sub amp to the amp on my 6x9s. I will have to look tomorrow.
P.S. I know how caps work, I got a pretty good book on electronics earlier this year. I am an IT major at a school where they don't have an actual IT program so we mostly take electronics classes and a mixture of computer science and other stuff that I won't use.
Oh well I will be out of there in a year or so. Bad choices lead to crappy schools.
