The 2UZ-FE S/C has been put on "hold" by TRD. I have driven all the Toyota Trucks with Superchargers on them. (I own the 4 Cylinder 3-RZ Tacoma S/C).
The I-Force runs pretty well with the Supercharger. It comes complete with an electronic interface that wires into the ECU. This controls and adapts many things, most noticably: the transmission. It changes the shift points, and actually shifts smoother at WOT than stock.
You can still find superchargers even after they have been discontinued/put on "hold". The best advice I can offer you if you are going to S/C your truck, is to install the TRD headers and exhaust. It will probably operate well with the cold air intake in conjunction. (Although the 2.4, 2.7, and 3.4 S/C's throw a lean code when combined with the intake.)
This blower (4.7) is probably the coolest out of the Toyota Trucks (it sorta sounds like a spaceship or something when it is winding up)
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Here are a couple pictures of my Supercharged Tacoma 4 Banger