Your talking about alot of parts needed to do the swap.
Wiring,PCM,Cluth Pedal,linkage,cv shafts, shifter and cables, tranny,flywheel.
If your lucky, the best bet would be to find a wrecked car that is complete with all the parts you need.
Trust me you don't want headaches just buy a manual version 9thgen. I'm having headaches just swapping the power windows from a XRS to CE. Good thing my CE is already manual so don't have to worry about the 2zz swap.