You may be able to do to the bottom end bearings with the motor in the car by pulling the oil pan. If bottom end bearings are your only problem, this might be the best way. There aren't really any special tools necessary to pull the motor/trans combo if you choose to go that way.
If you get a japanese motor, make sure you do all the rubber seals you can find, along with the timing belt and water pump while its out of the car. Then just put your original intake and exhaust manifolds on the motor and everything should bolt up just fine. You can use any 'early' 3s-fe (round spark plug boots) as long as you get the flexplate with it.
-Charlie
If you get a japanese motor, make sure you do all the rubber seals you can find, along with the timing belt and water pump while its out of the car. Then just put your original intake and exhaust manifolds on the motor and everything should bolt up just fine. You can use any 'early' 3s-fe (round spark plug boots) as long as you get the flexplate with it.
-Charlie