So we have similar situation with our hybrid.
Sitting in the parking lot, ICE off, hvac on in auto mode. I am sure that the a/c is running because it is delivery cold air (vs ambient) out of the dash vent. Water is dripping out beneath the car at the front and rear right of the vehicle which seem to be the area for the evaporator which reassure that air compressor is running. I am not sure if the Highlander hybrid compressor is a variable type or not and how it adjust the load pending the cooling needs.
Anyway, after several different scenario that I have been paying attention to, the fan does kick in like for a second and off or for 5 seconds and off and so on. This is depended on the ambient temperature. For the 1 second on and then then shut off, the hvac is in auto at 73*F and ambient is 74*F-75*F and full sun shine day. Other scenario is hvac set to auto 73*F, outside is ~82*F and the fan would run for 5-6 seconds and off on full sunny day. Today with the hvac set to auto 73*F, outside was 94*F and the fan would stay running a lot longer, but I did not really sit there to try and time it. Again, today was sunny as well.
Either way, I really hate it when the fan was kick on for a second and off. It sort of annoying if you taking a nap in the car and seems to lower the longevity of the fan motor by loading and unloading it like that. I rather sacrifice battery power to have it stay running longer. BTW, all of these was on ECO mode, I need to see what it would do in normal but I am not going to be able to see any cool weather anytime soon because we are about to hit the 100+ soon here in the south.